![]() ![]() 'Installing' means that you define a name that points to where the corresponding JRE is located on your local filesystem. ![]() See the Window/Preferences/Java/Installed JREs menu/dialog sequence. In Eclipse you 'install' JDKs/JRE's into Eclipse's Java inventory. I tried rebasing it over origin/master but there are conflicts. Done.$ cd bigdataviewer-core$ git checkout trakem2Branch trakem2 set up to track remote branch trakem2 from origin.Switched to a new branch 'trakem2'$ mvn packageINFO Scanning for projects.INFO -INFO BUILD FAILUREINFO -.So it seems like that branch is non-functional at the moment. You could simply build the branch from the command line, then replace the bigdataviewer-core of your Fiji with the new one.I tried to test this, but ran into problems with the branch: $ git clone git:///bigdataviewer/bigdataviewer-coreCloning into 'bigdataviewer-core'.remote: Counting objects: 15194, done.remote: Total 15194 (delta 0), reused 0 (delta 0), pack-reused 15194Receiving objects: 100% (4), 18.99 MiB 6.79 MiB/s, done.Resolving deltas: 100% (8167/8167), done.Checking connectivity. It seems like you are just trying to build the trakem2 branch of the bigdataviewer-core repository?So then, let’s take Eclipse out of the picture. Or if not directly acessible as a plugin, I would run it with something like this import ansfer(someArgs)in a python script.Thanks for your help.P.S.: an example of other things I would like to do (and why I was initially thinking that I would better set up a good Fiji/Eclipse environment) was to use the 2D segmentation of for the detection step in Trackmate. ![]() I imagine that at the end I could have a plugin (I would find it by pressing “l” in Fiji), for example “trakem2 to bdv”, that I would easily run from a python script/plugin with for example a IJ.run(‘trakem2tobdv’, some arguments). Maybe I can describe precisely what I want to do: transfer a trakem2 project into bdv following. In this case you might try the BigDataBrowserPlugin of the bigdataviewerfiji component.What you describe probably consists of a few simple steps but it is obscure to me. Ctrueden:Rather, each project generally has one or more main methods somewhere intended to allow you to take things for a test drive. In the Eclipse console I getERROR COMPILATION ERROR:INFO -ERROR No compiler is provided in this environment. ![]()
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March 2023
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